Deprecated API

Contents

• Methods

Deprecated Methods

Method	Description
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.getDefaultGroupItem(OmeroRawClient)	Method removed
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.getDefaultOwnerItem(OmeroRawClient)	Method removed
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.getGroupUsersMapAvailableForCurrentUser(OmeroRawClient)	use OmeroRawBrowserTools.getAvailableGroupUsersMap(OmeroRawClient) instead
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.getOrphanedFolderItem(OmeroRawClient, OmeroRawObjects.Group, OmeroRawObjects.Owner)	Internal method ; not public anymore
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.getOwnerItem(Experimenter)	Method removed
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.getStandardURI(URI, OmeroRawClient)	Method removed
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.getURIs(URI, OmeroRawClient)	Method removed
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.parseOmeroRawObjectId(URI, OmeroRawObjects.OmeroRawObjectType)	Method removed
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.parseOmeroRawObjectType(URI)	Method removed
qupath.ext.biop.servers.omero.raw.browser.OmeroRawBrowserTools.readAnnotationsItems(OmeroRawClient, OmeroRawObjects.OmeroRawObject, OmeroRawAnnotations.OmeroRawAnnotationType)	Internal method ; not public anymore
qupath.ext.biop.servers.omero.raw.browser.OmeroRawImageServerBrowserCommand.createStateNode(boolean)	use OmeroRawBrowserTools.createStateNode(boolean) instead
qupath.ext.biop.servers.omero.raw.OmeroRawImageServer.readPathObjects(String)	use OmeroRawScripting.getROIs(OmeroRawImageServer, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.addAndDeleteMetadata(Map<String, String>)	use OmeroRawScripting.addKeyValuesToQuPath(ProjectImageEntry, Map, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.addAndUpdateMetadata(Map<String, String>)	use OmeroRawScripting.addKeyValuesToQuPath(ProjectImageEntry, Map, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.addMetadata(Map<String, String>)	use OmeroRawScripting.addKeyValuesToQuPath(ProjectImageEntry, Map, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.addOmeroKeyValues(OmeroRawImageServer)	use OmeroRawScripting.addKeyValuesToQuPath(OmeroRawImageServer, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.addOmeroKeyValuesAndDeleteMetadata(OmeroRawImageServer)	use OmeroRawScripting.addKeyValuesToQuPath(OmeroRawImageServer, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.addOmeroKeyValuesAndUpdateMetadata(OmeroRawImageServer)	use OmeroRawScripting.addKeyValuesToQuPath(OmeroRawImageServer, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.addTagsToQuPath(OmeroRawImageServer)	use OmeroRawScripting.addTagsToQuPath(OmeroRawImageServer, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.copyOmeroChannelsColorToQuPath(OmeroRawImageServer, boolean)	use OmeroRawScripting.copyOmeroChannelsColorToQuPath(OmeroRawImageServer, ImageData, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.copyOmeroChannelsDisplayRangeToQuPath(OmeroRawImageServer, boolean)	use OmeroRawScripting.copyOmeroChannelsDisplayRangeToQuPath(OmeroRawImageServer, ImageData, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.copyOmeroChannelsNameToQuPath(OmeroRawImageServer, boolean)	use OmeroRawScripting.copyOmeroChannelsNameToQuPath(OmeroRawImageServer, ImageData, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.deleteAnnotationFiles(OmeroRawImageServer)	use OmeroRawScripting.deleteAnnotationMeasurements(OmeroRawImageServer, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.deleteAnnotationFiles(OmeroRawImageServer, Collection<FileAnnotationData>)	use OmeroRawScripting.deleteAnnotationMeasurements(OmeroRawImageServer, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.deleteAnnotationFiles(OmeroRawImageServer, Collection<FileAnnotationData>, String)	OmeroRawScripting.deleteAnnotationMeasurements(OmeroRawImageServer, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.deleteDetectionFiles(OmeroRawImageServer)	use OmeroRawScripting.deleteDetectionMeasurements(OmeroRawImageServer, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.deleteDetectionFiles(OmeroRawImageServer, Collection<FileAnnotationData>)	use OmeroRawScripting.deleteDetectionMeasurements(OmeroRawImageServer, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.deleteDetectionFiles(OmeroRawImageServer, Collection<FileAnnotationData>, String)	use OmeroRawScripting.deleteDetectionMeasurements(OmeroRawImageServer, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.deleteFiles(OmeroRawImageServer, String)	use Client.delete(Collection) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.getSimpleOmeroClientInstance(OmeroRawImageServer)	use OmeroRawClient.getSimpleClient() instead (accessible from OmeroRawImageServer.getClient())
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.importOmeroKeyValues(OmeroRawImageServer)	use OmeroRawScripting.addKeyValuesToQuPath(OmeroRawImageServer, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.importOmeroROIsToQuPath(OmeroRawImageServer)	use OmeroRawScripting.addROIsToQuPath(OmeroRawImageServer, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.importOmeroROIsToQuPath(OmeroRawImageServer, boolean)	use OmeroRawScripting.addROIsToQuPath(OmeroRawImageServer, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.importOmeroROIsToQuPath(OmeroRawImageServer, boolean, String)	use OmeroRawScripting.addROIsToQuPath(OmeroRawImageServer, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.importOmeroTags(OmeroRawImageServer)	use OmeroRawScripting.addTagsToQuPath(OmeroRawImageServer, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.linkFile(OmeroRawClient, FileAnnotationData, DataObject)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.readFilesAttachedToCurrentImageOnOmero(OmeroRawImageServer)	use AnnotatableWrapper.getFileAnnotations(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendAnnotationMeasurementTable(Collection<PathObject>, OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendAnnotationMeasurementsToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendAnnotationMeasurementTable(OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendAnnotationMeasurementsToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendAnnotationMeasurementTableAsCSV(Collection<PathObject>, OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendAnnotationMeasurementsAsCSVToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendAnnotationMeasurementTableAsCSV(OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendAnnotationMeasurementsAsCSVToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer)	use OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean)	use OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean, String, boolean) instead.
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean, String)	use OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendChannelsColorToOmero(OmeroRawImageServer)	use OmeroRawScripting.sendQuPathChannelsColorToOmero(OmeroRawImageServer, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendChannelsDisplayRangeToOmero(OmeroRawImageServer)	use OmeroRawScripting.sendQuPathChannelsDisplayRangeToOmero(OmeroRawImageServer, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendChannelsNameToOmero(OmeroRawImageServer)	use OmeroRawScripting.sendQuPathChannelsNameToOmero(OmeroRawImageServer, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendDetectionMeasurementTable(Collection<PathObject>, OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendDetectionMeasurementsToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendDetectionMeasurementTable(OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendDetectionMeasurementsToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendDetectionMeasurementTableAsCSV(Collection<PathObject>, OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendDetectionMeasurementsAsCSVToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendDetectionMeasurementTableAsCSV(OmeroRawImageServer, ImageData<BufferedImage>)	use OmeroRawScripting.sendDetectionMeasurementsAsCSVToOmero(OmeroRawImageServer, Collection, ImageData, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendDetectionsToOmero(OmeroRawImageServer)	method removed
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendDetectionsToOmero(OmeroRawImageServer, boolean)	method removed
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendDetectionsToOmero(OmeroRawImageServer, boolean, String)	method removed
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendImageNameToOmero(OmeroRawImageServer)	use OmeroRawScripting.sendQuPathImageNameToOmero(OmeroRawImageServer, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendMeasurementTableAsCSVToOmero(Collection<PathObject>, OmeroRawImageServer, ImageData<BufferedImage>, String)	use OmeroRawScripting.sendMeasurementAsCSVToOmero(OmeroRawImageServer, Collection, ImageData, String, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendMeasurementTableToOmero(Collection<PathObject>, OmeroRawImageServer, ImageData<BufferedImage>, String)	use OmeroRawScripting.sendMeasurementsToOmero(OmeroRawImageServer, Collection, ImageData, String, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendMetadataOnOmero(Map<String, String>, OmeroRawImageServer)	use OmeroRawScripting.sendQPMetadataToOmero(Map, OmeroRawImageServer, Utils.UpdatePolicy, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendMetadataOnOmeroAndDeleteKeyValues(Map<String, String>, OmeroRawImageServer)	use OmeroRawScripting.sendQPMetadataToOmero(Map, OmeroRawImageServer, Utils.UpdatePolicy, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendMetadataOnOmeroAndUpdateKeyValues(Map<String, String>, OmeroRawImageServer)	use OmeroRawScripting.sendQPMetadataToOmero(Map, OmeroRawImageServer, Utils.UpdatePolicy, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendParentMeasurementTableAsCSV(LinkedHashMap<String, List<String>>, OmeroRawClient, Collection<DataObject>, boolean)	use OmeroRawScripting.sendParentMeasurementsAsCSVToOmero(LinkedHashMap, OmeroRawClient, Collection, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendParentMeasurementTableAsCSV(LinkedHashMap<String, List<String>>, OmeroRawClient, Collection<DataObject>, boolean, String)	use OmeroRawScripting.sendParentMeasurementsAsCSVToOmero(LinkedHashMap, OmeroRawClient, Collection, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendParentMeasurementTableAsOmeroTable(LinkedHashMap<String, List<String>>, OmeroRawClient, Collection<DataObject>, boolean)	use OmeroRawScripting.sendParentMeasurementsToOmero(LinkedHashMap, OmeroRawClient, Collection, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendParentMeasurementTableAsOmeroTable(LinkedHashMap<String, List<String>>, OmeroRawClient, Collection<DataObject>, boolean, String)	use OmeroRawScripting.sendParentMeasurementsToOmero(LinkedHashMap, OmeroRawClient, Collection, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer)	use OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, boolean)	use OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean, String, boolean) instead.
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, boolean, String)	use OmeroRawScripting.sendAnnotationsToOmero(OmeroRawImageServer, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, Collection<PathObject>)	use OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, Collection, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, Collection<PathObject>, boolean)	use OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, Collection, boolean, String, boolean) instead.
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, Collection<PathObject>, boolean, String)	use OmeroRawScripting.sendPathObjectsToOmero(OmeroRawImageServer, Collection, boolean, String, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.sendTagsToOmero(List<String>, OmeroRawImageServer)	use OmeroRawScripting.sendTagsToOmero(List, OmeroRawImageServer, Utils.UpdatePolicy, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.setChannelsColorFromOmeroChannel(OmeroRawImageServer)	use OmeroRawScripting.copyOmeroChannelsColorToQuPath(OmeroRawImageServer, ImageData, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.setChannelsDisplayRangeFromOmeroChannel(OmeroRawImageServer)	use OmeroRawScripting.copyOmeroChannelsDisplayRangeToQuPath(OmeroRawImageServer, ImageData, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawScripting.setChannelsNameFromOmeroChannel(OmeroRawImageServer)	use OmeroRawScripting.copyOmeroChannelsNameToQuPath(OmeroRawImageServer, ImageData, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addAttachmentToOmero(File, OmeroRawClient, long)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addAttachmentToOmero(File, OmeroRawClient, long, String)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addAttachmentToOmero(File, OmeroRawClient, long, String, String)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addAttachmentToOmero(File, OmeroRawClient, DataObject)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addAttachmentToOmero(File, OmeroRawClient, DataObject, String)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addAttachmentToOmero(File, OmeroRawClient, DataObject, String, String)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper[]) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addKeyValuesOnOmero(MapAnnotationData, OmeroRawClient, long)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addTableToOmero(TableData, String, OmeroRawClient, long)	use AnnotatableWrapper.addTable(Client, TableWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addTableToOmero(TableData, String, OmeroRawClient, DataObject)	use AnnotatableWrapper.addTable(Client, TableWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.addTagsOnOmero(TagAnnotationData, OmeroRawClient, long)	use AnnotatableWrapper.link(Client, GenericAnnotationWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.buildCSVFileFromMeasurementTable(Collection<PathObject>, ObservableMeasurementTableData, long, String, String)	Method moved to a non-public class
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.checkUniqueKeyInAnnotationMap(List<NamedValue>)	method moved with a non-public access
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.convertMeasurementTableToOmeroTable(Collection<PathObject>, ObservableMeasurementTableData, OmeroRawClient, long)	Method moved with a non-public access
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.createNewDataset(OmeroRawClient, long, String)	use ProjectWrapper.addDataset(Client, String, String) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.createNewDataset(OmeroRawClient, long, String, String)	use ProjectWrapper.addDataset(Client, String, String) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.createNewDataset(OmeroRawClient, String)	use DatasetWrapper(String, String) instead followed by GenericObjectWrapper.saveAndUpdate(Client)
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.createNewDataset(OmeroRawClient, String, String)	use DatasetWrapper(String, String) instead followed by GenericObjectWrapper.saveAndUpdate(Client)
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.createOmeroROIsFromPathObjects(Collection<PathObject>)	Method moved with a non-public access
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.createPathObjectsFromOmeroROIs(List<ROIWrapper>)	Method moved with a non-public access
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.deleteAllOmeroROIs(OmeroRawClient, long)	use Client.delete(Collection) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.deleteFiles(OmeroRawClient, List<FileAnnotationData>)	use Client.delete(Collection) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.deleteKeyValuesOnOmero(List<MapAnnotationData>, OmeroRawClient)	use Client.delete(Collection) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.deleteOmeroROIs(OmeroRawClient, Collection<ROIData>)	use Client.delete(Collection)} instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.downloadImage(OmeroRawClient, long, String)	use ImageWrapper.download(Client, String) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getAllOmeroGroups(OmeroRawClient)	use Client.getGroups() if the user is admin. Otherwise, use ExperimenterWrapper.getGroups()
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getCurrentDateAndHour()	use Utils.getCurrentDateAndHour() instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getDefaultOmeroGroup(OmeroRawClient, long)	use ExperimenterWrapper.getDefaultGroup() instead and Client.getUser(long) to get the ExperimenterWrapper object.
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getErrorStackTraceAsString(Exception)	use Utils.getErrorStackTraceAsString(Exception) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getOmeroGroup(OmeroRawClient, long, String)	use Client.getGroup(long) or Client.getGroup(String)instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getOmeroUser(OmeroRawClient, long, String)	use Client.getUser(long) or Client.getUser(String) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getOmeroUsersInGroup(OmeroRawClient, long)	use GroupWrapper.getExperimenters() instead and Client.getGroup(long) to get the GroupWrapper object
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getParent(OmeroRawClient, String, long)	use OmeroRawTools.getParentContainer(OmeroRawClient, GenericRepositoryObjectWrapper, boolean) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getROIComment(ROIData)	Method moved with a non-public access
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getROIComment(Shape)	Method moved with a non-public access
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getThumbnail(OmeroRawClient, long, int)	use ImageWrapper.getThumbnail(Client, int) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.getUserOmeroGroups(OmeroRawClient, long)	use ExperimenterWrapper.getGroups() instead and Client.getUser(long) to get ExperimenterWrapper object.
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.parseROIComment(String)	Method moved with a non-public access
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readAttachments(OmeroRawClient, long)	use AnnotatableWrapper.getFileAnnotations(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readAttachments(OmeroRawClient, DataObject)	use AnnotatableWrapper.getFileAnnotations(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readImageFileType(OmeroRawClient, long)	use ImageWrapper.getFormat() instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readKeyValues(OmeroRawClient, long)	use AnnotatableWrapper.getMapAnnotations(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readKeyValuesAsNamedValue(OmeroRawClient, long)	use MapAnnotationWrapper.getContent() instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroAnnotations(OmeroRawClient, DataObject)	use AnnotatableWrapper.getAnnotations(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroChannels(OmeroRawClient, long)	use ImageWrapper.getChannels(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroDataset(OmeroRawClient, Long)	use Browser.getDataset(Long) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroDatasets(OmeroRawClient, List<Long>)	use Browser.getDatasets(Long...)
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroImage(OmeroRawClient, long)	use Browser.getImage(Long) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroOrphanedDatasets(OmeroRawClient)	user Browser.getOrphanedDatasets(ExperimenterWrapper)} instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroPlates(OmeroRawClient, List<Long>)	use OmeroRawTools.readPlates(OmeroRawClient, List) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroProjects(OmeroRawClient, List<Long>)	use Browser.getProjects(Long...) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroProjectsByUser(OmeroRawClient, long)	Use Browser.getProjects(ExperimenterWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroScreensByUser(OmeroRawClient, long)	Use Browser.getScreens(ExperimenterWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOmeroWells(OmeroRawClient, long)	use PlateWrapper.getWells(Client)
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOrphanedDatasets(OmeroRawClient, long)	user Browser.getOrphanedDatasets(ExperimenterWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readOrphanedImages(OmeroRawClient, long)	use Browser.getOrphanedImages(ExperimenterWrapper) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readTables(OmeroRawClient, long)	use AnnotatableWrapper.getTables(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readTags(OmeroRawClient, long)	use AnnotatableWrapper.getTags(Client) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.readUserTags(OmeroRawClient)	use Browser.getTags() instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.splitNewAndExistingKeyValues(Map<String, String>, Map<String, String>)	use Utils.splitNewAndExistingKeyValues(Map, Map) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.updateKeyValuesOnOmero(List<MapAnnotationData>, OmeroRawClient)	method removed
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.updateObjectOnOmero(OmeroRawClient, IObject)
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.updateObjectsOnOmero(OmeroRawClient, List<IObject>)	Method removed ; use the official API
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.uploadImage(OmeroRawClient, long, String)	use DatasetWrapper.importImage(Client, String) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.uploadImage(OmeroRawClient, DatasetWrapper, String)	use DatasetWrapper.importImage(Client, String) instead
qupath.ext.biop.servers.omero.raw.utils.OmeroRawTools.writeOmeroROIs(OmeroRawClient, long, List<ROIData>)	use ImageWrapper.saveROIs(Client, ROIWrapper...) instead