ch.epfl.biop.imaris

Class ImarisCalibration

java.lang.Object

ij.measure.Calibration

ch.epfl.biop.imaris.ImarisCalibration

All Implemented Interfaces:

Cloneable

public class ImarisCalibration
extends ij.measure.Calibration

Extension of ImageJ calibration: Easy way to set ImageJ calibration from an Imaris dataset by using a custom constructor

Field Summary

Fields

Modifier and Type	Field and Description
int	cSize
int	tSize
double	xEnd
int	xSize
double	yEnd
int	ySize
double	zEnd
int	zSize

Fields inherited from class ij.measure.Calibration

CUSTOM, DEFAULT_VALUE_UNIT, EXP_RECOVERY, EXP_WITH_OFFSET, EXPONENTIAL, fps, frameInterval, GAMMA_VARIATE, GAUSSIAN, info, LOG, LOG2, loop, NONE, pixelDepth, pixelHeight, pixelWidth, POLY2, POLY3, POLY4, POWER, RODBARD, RODBARD2, STRAIGHT_LINE, UNCALIBRATED_OD, xOrigin, yOrigin, zOrigin

Constructor Summary

Constructors

Constructor and Description
ImarisCalibration(Imaris.IDataSetPrx dataset)

Method Summary

Modifier and Type	Method and Description
ImarisCalibration	getDownsampled(double downsample)

Methods inherited from class ij.measure.Calibration

calibrated, clone, copy, disableDensityCalibration, equals, getCoefficients, getCTable, getCValue, getCValue, getFunction, getInvertY, getRawValue, getRawX, getRawY, getRawY, getRawZ, getTimeUnit, getUnit, getUnits, getValueUnit, getX, getXUnit, getY, getY, getYUnit, getZ, getZUnit, isSigned16Bit, scaled, setCTable, setFunction, setFunction, setImage, setInvertY, setLoopBackAndForth, setSigned16BitCalibration, setTimeUnit, setUnit, setValueUnit, setXUnit, setYUnit, setZUnit, toString, zeroClip

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

xEnd

public final double xEnd

yEnd

public final double yEnd

zEnd

public final double zEnd

xSize

public int xSize

ySize

public int ySize

zSize

public int zSize

cSize

public int cSize

tSize

public int tSize

Constructor Detail

ImarisCalibration

public ImarisCalibration(Imaris.IDataSetPrx dataset)
                  throws Imaris.Error

Throws:

Imaris.Error

Method Detail

getDownsampled

public ImarisCalibration getDownsampled(double downsample)