| Package | Description |
|---|---|
| ch.epfl.biop.imaris |
| Class and Description |
|---|
| ImarisCalibration
Extension of ImageJ calibration:
Easy way to set ImageJ calibration from an Imaris dataset
by using a custom constructor
|
| ItemQuery |
| ItemQuery.ItemQueryBuilder |
| ItemQuery.ItemType |
| SpotsDetector
Helper functions for spots detection in Imaris
With the use of a builder pattern, this class combines the following Imaris functions :
- DetectSpots2()
- DetectSpotsRegionGrowing() TODO: implement and explain how the builder switch or not to this function
DetectSpotsWithRegions() not supported -> replaced by DetectSpotsRegionGrowing() T
DetectSpots() obsolete -> replaced by DetectSpots2()
The Builder is tuned to allow for an invisible switch between these functions depending on the builder methods calls
TODO : look at Elliptical spot detection
Authors
Nicolas Chiaruttini, nicolas.chiaruttini@epfl.ch
Olivier Burri, olivier.burri@epfl.ch
BIOP, EPFL, Jan 2020
Useful links:
file:///C:/Program%20Files/Bitplane/Imaris%20x64%209.5.1/html/xtinterface/structImaris_1_1IImageProcessing.html
file:///C:/Program%20Files/Bitplane/Imaris%20x64%209.5.1/html/xtinterface/structImaris_1_1IImageProcessing.html#ae10348d92f0d2df6848ed44253c69391
|
| SpotsDetector.SpotsDetectorBuilder |
| StatsQuery
This class is based on a Builder model to obtain selected statistics from an Imaris
cStatisticValues object
It allows for selecting specific item IDs, stat names, channels and timepoints. |
| SurfacesDetector
Helper functions for surface detection in Imaris
With the use of a builder pattern, this class combines the following Imaris functions :
- DetectSurfaces
- DetectSurfaceRegionGrowing TODO: implement and explain how the builder switch or not to this function
- DetectSurfacesRegionGrowingWithUpperThreshold TODO: implement and explain how the builder switch or not to this function
The Builder is tuned to allow for an invisible switch between these functions depending on the builder methods calls
If an upper threshold is set {
calling DetectSurfacesRegionGrowingWithUpperThreshold
} else if any of the seed detection parameters is set {
calling DetectSurfaceRegionGrowing
} else {
calling DetectSurfaces
}
Authors
Nicolas Chiaruttini, nicolas.chiaruttini@epfl.ch
Olivier Burri, olivier.burri@epfl.ch
BIOP, EPFL, Jan 2020
Useful links:
file:///C:/Program%20Files/Bitplane/Imaris%20x64%209.5.1/html/xtinterface/structImaris_1_1IImageProcessing.html
file:///C:/Program%20Files/Bitplane/Imaris%20x64%209.5.1/html/xtinterface/structImaris_1_1IImageProcessing.html#a41275043bc718252958bce85f4d4561a
|
| SurfacesDetector.SurfacesDetectorBuilder |
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