Package qupath.ext.biop.cellpose

Interface OpCreators.TileOpCreator

All Known Implementing Classes:

OpCreators.PercentileTileOpCreator, OpCreators.ZeroMeanVarianceTileOpCreator

Enclosing class:

OpCreators

public static interface OpCreators.TileOpCreator

Helper class for creating (tile-based) ImageOps with parameters that are derived from an entire image or ROI.

This is most useful for normalization, where statistics may need to be calculated across the image even if they are then applied locally (e.g. an offset and scaling factor).

Method Summary

Modifier and Type	Method	Description
List<qupath.opencv.ops.ImageOp>	createOps(qupath.opencv.ops.ImageDataOp op, qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.roi.interfaces.ROI mask, qupath.lib.regions.ImagePlane plane)	Compute the (tile-based) ops from the image.

Method Details

createOps

List<qupath.opencv.ops.ImageOp> createOps(qupath.opencv.ops.ImageDataOp op,
 qupath.lib.images.ImageData<BufferedImage> imageData,
 qupath.lib.roi.interfaces.ROI mask,
 qupath.lib.regions.ImagePlane plane)
                                   throws IOException

Compute the (tile-based) ops from the image.

Parameters:

op - the data op, which determines how to extract channels from the image data

imageData - the image data to process

mask - ROI mask that may be used to restrict the region being considered (optional)

plane - the 2D image plane to use; if not provided, the plane from any ROI will be used, or otherwise the default plane

Returns:

Throws:

IOException