Package qupath.ext.biop.cellpose

Class OpCreators.ZeroMeanVarianceTileOpCreator

java.lang.Object

qupath.ext.biop.cellpose.OpCreators.ZeroMeanVarianceTileOpCreator

All Implemented Interfaces:

OpCreators.TileOpCreator

Enclosing class:

OpCreators

public static class OpCreators.ZeroMeanVarianceTileOpCreator
extends Object

Tile op creator that computes offset and scale values across the full image to normalize to zero mean and unit variance.

Method Summary

Modifier and Type	Method	Description
protected List<qupath.opencv.ops.ImageOp>	compute(org.bytedeco.opencv.opencv_core.Mat mat)
List<qupath.opencv.ops.ImageOp>	createOps(qupath.opencv.ops.ImageDataOp op, qupath.lib.images.ImageData<BufferedImage> imageData, qupath.lib.roi.interfaces.ROI mask, qupath.lib.regions.ImagePlane plane)	Compute the (tile-based) ops from the image.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Details

compute

protected List<qupath.opencv.ops.ImageOp> compute(org.bytedeco.opencv.opencv_core.Mat mat)

createOps

public List<qupath.opencv.ops.ImageOp> createOps(qupath.opencv.ops.ImageDataOp op,
 qupath.lib.images.ImageData<BufferedImage> imageData,
 qupath.lib.roi.interfaces.ROI mask,
 qupath.lib.regions.ImagePlane plane)
                                          throws IOException

Description copied from interface: OpCreators.TileOpCreator

Compute the (tile-based) ops from the image.

Specified by:

createOps in interface OpCreators.TileOpCreator

Parameters:

op - the data op, which determines how to extract channels from the image data

imageData - the image data to process

mask - ROI mask that may be used to restrict the region being considered (optional)

plane - the 2D image plane to use; if not provided, the plane from any ROI will be used, or otherwise the default plane

Returns:

Throws:

IOException