Demo

Installation

Build

Run

FAQ

Run BIOP-Desktop

** Table of contents**

• Start BIOP-Desktop remotly
  • Kubernetes vanilla
  • Kubernetes RunAI
  • Slurm
  • Renku

• Start BIOP-Desktop locally

• Use BIOP-Desktop

Run BIOP-Desktop remotly

Kubernetes vanilla

Files to use are in the k8s folder on BIOP-desktop github repository

Create pod

… using deployment

kubectl apply -f biop-desktop-deployment.yaml

… using job

kubectl apply -f biop-desktop-job.yaml

Access to jupyter

kubectl port-forward $(kubectl get pods -l app=biop-desktop -o name|head -n 1) 8888

or run the following command to get the pod name and specify the pod name in the following command

kubectl get pods 
NAME               READY   STATUS    RESTARTS   AGE
biop-desktop-0-0   1/1     Running   0          30s
kubectl port-forward biop-desktop-0-0 8888

Open http://127.0.0.1:8888/lab in your web browser and continue with Use BIOP-Desktop

Cleanup

kubectl delete deployments.apps,jobs.batch -l app=biop-desktop

Kubernetes RunAI

Create pod using job

kubectl apply -f biop-desktop-runaijob.yaml

Access to jupyter

kubectl port-forward $(kubectl get pods -l app=biop-desktop -o name|head -n 1) 8888

or run the following command to get the pod name and specify the pod name in the following command

kubectl get pods 
NAME               READY   STATUS    RESTARTS   AGE
biop-desktop-0-0   1/1     Running   0          30s
kubectl port-forward biop-desktop-0-0 8888

Open http://127.0.0.1:8888/lab in your web browser and continue with Use BIOP-Desktop

Cleanup

kubectl delete runaijobs.run.ai -l app=biop-desktop

RunAI interface

Slurm

(TODO)

Renku

(TODO)

Start BIOP-Desktop locally

Requirements

1.Please cf Installation

2.a. Pull the image from dockerhub using the following command:

docker pull biop/biop-desktop:0.1.0

or

2.b. Alternatively you can Build image.

Run

(0 - Start Docker Desktop)

Open a command prompt and enter the following command:

docker run -it --rm -p 8888:8888 --gpus device=0 biop/biop-desktop:0.1.0

Access to jupyter

Open http://127.0.0.1:8888/lab in your web browser and continue with Use BIOP-Desktop

Use BIOP-Desktop

You arrive on JupyterLab (which is convenient to drag & drop image/file see faq for more info)

AND Click VNC icon to open the Desktop

On the Desktop

You can use the software installed in the image

To discover some workflows you can have a look to Demo